brown #
= weekly rock chart peak
blue #
= pop chart peak
| 1 | I Write Sins Not Tragedies | 1 | 1 | Jul 2006 |  |
| 2 | But It's Better If You Do | Jul 2006 | |
| 3 | The Only Difference Between Martyrdom And Suicide Is Press Coverage | 2 | 28 | Oct 2006 | |
| 4 | Lying Is The Most Fun A Girl Can Have Without Taking Her Clothes Off | 13 | Nov 2006 | |
| 5 | Nine In The Afternoon | 4 | Mar 2008 | |
| 6 | Mad As Rabbits | Apr 2008 | |
| 7 | That Green Gentleman (Things Have Changed) | Jun 2008 | |
| 8 | Northern Downpour | Nov 2008 | |
| 9 | New Perspective | Sep 2009 | |
| 10 | The Ballad Of Mona Lisa | 29 | Apr 2011 | |
| 11 | Ready To Go (Get Me Out Of My Mind) | Aug 2011 | |
| 12 | Mercenary | Jan 2012 | |
| 13 | Miss Jackson | 9 | Jul 2013 | |
| Panic! At The Disco Featuring Lolo |
| 14 | This Is Gospel | Jun 2014 | |
| 15 | Girls/Girls/Boys | Aug 2014 | |
| 16 | Hallelujah | 18 | Jun 2015 | |