brown #
= weekly rock chart peak
blue #
= pop chart peak
| 1 | Be My Yoko Ono | 1991 |  |
| 2 | Lovers In A Dangerous Time | Feb 1992 | |
| 3 | Enid | 1992 | |
| 4 | If I Had $1000000 | 1992 | |
| 5 | Shoebox | 1995 | |
| 6 | The Old Apartment | Apr 1997 | |
| 7 | God Rest Ye Merry Gentlemen/We Three Kings | Dec 1997 | |
| Barenaked Ladies Featuring Sarah McLachlan |
| 8 | Brian Wilson | 22 | Feb 1998 | |
| 9 | One Week | 3 | 1 | Sep 1998 | |
| 10 | It's All Been Done | 18 | 20 | Dec 1998 | |
| 11 | Alcohol | Mar 1999 | |
| 12 | Call And Answer | May 1999 | |
| 13 | When Doves Cry | 1999 | |
| 14 | Get In Line | 1999 | |
| 15 | Pinch Me | 29 | 21 | Nov 2000 | |
| 16 | Green Christmas | Dec 2000 | |
| 17 | Too Little Too Late | Mar 2001 | |
| 18 | Falling For The First Time | Aug 2001 | |
| 19 | Thanks, That Was Fun | Jan 2002 | |
| 20 | Another Postcard (Chimps) | Oct 2003 | |
| 21 | Testing 1, 2, 3 | Apr 2004 | |
| 22 | For You | Jun 2004 | |
| 23 | Elf's Lament | Dec 2004 | |
| Barenaked Ladies Featuring Michael Buble |
| 24 | One Little Slip | Nov 2005 | |
| 25 | Easy | Sep 2006 | |
| 26 | Wind It Up | Feb 2007 | |
| 27 | Big Bang Theory Theme | Oct 2007 | |
| 28 | 7 8 9 | May 2008 | |
| 29 | Pollywog In A Bog | Jun 2008 | |
| 30 | You Run Away | Mar 2010 | |
| 31 | Every Subway Car | Jul 2010 | |
| Barenaked Ladies Featuring Eric McCarley |
| 32 | Odds Are | Jul 2013 | |
| 33 | Boomerang | 2013 | |