brown #
= weekly rock chart peak
blue #
= pop chart peak
| 51 | Get Born Again | 4 | Jul 1999 |  |
| Alice In Chains |
| 52 | Dizzy | 4 | Apr 1999 | |
| Goo Goo Dolls |
| 53 | Ana's Song (Open Fire) | 6 | Jul 1999 | |
| Silverchair |
| 54 | She's Got Issues | 9 | Nov 1999 | |
| The Offspring |
| 55 | Living Dead Girl | 4 | Mar 1999 | |
| Rob Zombie |
| 56 | Keep Away | 11 | Oct 1999 | |
| Godsmack |
| 57 | Mudshovel | 11 | Nov 1999 | |
| Staind |
| 58 | Come Original | 5 | Oct 1999 | |
| 311 |
| 59 | Do Right | 7 | Nov 1999 | |
| Jimmie's Chicken Shack |
| 60 | Gimme Some More | Jan 1999 | |
| Busta Rhymes |
| 61 | Welcome To The Fold | 8 | Aug 1999 | |
| Filter |
| 62 | At The Stars | 8 | Jan 1999 | |
| Better Than Ezra |
| 63 | We're In This Together | 7 | Oct 1999 | |
| Nine Inch Nails |
| 64 | Hanginaround | 8 | 20 | Dec 1999 | |
| Counting Crows |
| 65 | No More, No Less | 9 | Jul 1999 | |
| Collective Soul |
| 66 | Head | 8 | Mar 1999 | |
| Tin Star |
| 67 | Another Brick In The Wall (Part 2) | 7 | Jan 1999 | |
| Class Of '99 Featuring Layne Staley Tom Morello Stephen Perkins Martyn Le Noble & Matt Serletic |
| 68 | Black Balloon | 8 | 6 | Jul 1999 | |
| Goo Goo Dolls |
| 69 | Crush | 12 | 30 | Feb 1999 | |
| Dave Matthews Band |
| 70 | New | 8 | Apr 1999 | |
| No Doubt |
| 71 | Zip-Lock | 6 | Sep 1999 | |
| Lit |
| 72 | The Great Beyond | 7 | Dec 1999 | |
| R.E.M. |
| 73 | Beautiful | 11 | Sep 1999 | |
| Joydrop |
| 74 | Smooth | 10 | 1 | Nov 1999 | |
| Santana Featuring Rob Thomas |
| 75 | Meet Virginia | 11 | 10 | Jul 1999 | |
| Train |