brown #
= weekly rock chart peak
blue #
= pop chart peak
| 1 | Clones | Aug 1996 |  |
| 2 | What They Do | Mar 1997 | |
| 3 | You Got Me | 17 | Apr 1999 | |
| The Roots Featuring Erykah Badu |
| 4 | Break You Off | Mar 2003 | |
| The Roots Featuring Musiq |
| 5 | The Seed (2.0) | 29 | Jun 2003 | |
| The Roots Featuring Cody Chestnutt |
| 6 | Don't Say Nuthin' | Jun 2004 | |
| 7 | I Don't Care | Oct 2004 | |
| 8 | Let It Be | Feb 2010 | |
| Jennifer Hudson Featuring The Roots |
| 9 | Wake Up Everybody | Sep 2010 | |
| John Legend & The Roots Featuring Common & Melanie Fiona |
| 10 | Shine | Jan 2011 | |
| John Legend & The Roots |
| 11 | Grapes On The Vine | Dec 2011 | |
| Betty Wright And The Roots Featuring Lil Wayne |
| 12 | Walk Us Uptown | Oct 2013 | |
| Elvis Costello And The Roots |