brown #
= weekly rock chart peak
blue #
= pop chart peak
| 1 | Down In It | 20 | Jan 1990 |  |
| 2 | Head Like A Hole | 19 | Mar 1990 | |
| 3 | Terrible Lie | May 1990 | |
| 4 | Sin | Nov 1991 | |
| 5 | Something I Can Never Have | 1991 | |
| 6 | Happiness In Slavery | 16 | Oct 1992 | |
| 7 | Gave Up | 1992 | |
| 8 | Physical (You're So) | 1992 | |
| 9 | Wish | Feb 1993 | |
| 10 | March Of The Pigs | Mar 1994 | |
| 11 | Burn | Aug 1994 | |
| 12 | Closer | 24 | Sep 1994 | |
| 13 | Piggy | 9 | Jan 1995 | |
| 14 | Hurt | 3 | May 1995 | |
| 15 | Dead Souls | 1995 | |
| 16 | The Perfect Drug | 6 | Jun 1997 | |
| 17 | I'm Afraid Of Americans | 12 | Dec 1997 | |
| David Bowie with Trent Reznor |
| 18 | Starfxxkers, Inc. | 21 | Jul 1999 | |
| 19 | The Day The World Went Away | Aug 1999 | |
| 20 | We're In This Together | 7 | Oct 1999 | |
| 21 | The Frail | 1999 | |
| 22 | Into The Void | 3 | Jan 2000 | |
| 23 | Deep | 12 | Jun 2001 | |
| 24 | The Hand That Feeds | 1 | Apr 2005 | |
| 25 | Only | 1 | Aug 2005 | |
| 26 | Every Day Is Exactly The Same | 1 | Jan 2006 | |
| 27 | Survivalism | 1 | Mar 2007 | |
| 28 | Capital G | 3 | Jun 2007 | |
| 29 | The Beginning Of The End | 2007 | |
| 30 | Discipline | 5 | May 2008 | |
| 31 | Not So Pretty Now | Jun 2009 | |
| 32 | Immigrant Song | Jan 2012 | |
| Trent Reznor And Atticus Ross Featuring Karen O, Jimmy Page, Robert Plant |
| 33 | Came Back Haunted | 1 | Jul 2013 | |
| 34 | Everything | Oct 2013 | |
| 35 | Copy Of A | Nov 2013 | |