brown #
= weekly rock chart peak
blue #
= pop chart peak
| 1 | Uno | Jun 1999 |  |
| 2 | Cave | Sep 1999 | |
| 3 | Sunburn | Mar 2000 | |
| 4 | Unintended | Jun 2000 | |
| 5 | Muscle Museum | Oct 2000 | |
| 6 | Plug In Baby | Mar 2001 | |
| 7 | New Born | Jun 2001 | |
| 8 | Bliss | Sep 2001 | |
| 9 | Hyper Music | Nov 2001 | |
| 10 | Feeling Good | Dec 2001 | |
| 11 | Dead Star | Mar 2002 | |
| 12 | Can't Take My Eyes Off You | Jun 2002 | |
| 13 | In Your World | Jun 2002 | |
| 14 | Sing For Absolution | May 2004 | |
| 15 | Time Is Running Out | 14 | May 2004 | |
| 16 | Butterflies And Hurricanes | Sep 2004 | |
| 17 | Hysteria (I Want It Now) | 16 | Jan 2005 | |
| 18 | Stockholm Syndrome | 28 | May 2005 | |
| 19 | Knights Of Cydonia | 12 | Aug 2006 | |
| 20 | Starlight | 1 | Jan 2007 | |
| 21 | Invincible | Apr 2007 | |
| 22 | Map Of The Problematique | Jun 2007 | |
| 23 | Supermassive Black Hole | 3 | Aug 2007 | |
| 24 | The United States Of Eurasia | 27 | Aug 2009 | |
| 25 | Exogenesis Symphony Part I Overture | Sep 2009 | |
| 26 | Exogenesis Symphony Part III Redemption | Sep 2009 | |
| 27 | Guiding Light | Sep 2009 | |
| 28 | MK Ultra | Sep 2009 | |
| 29 | Unnatural Selection | Sep 2009 | |
| 30 | Uprising | 1 | Nov 2009 | |
| 31 | Resistance | 1 | Mar 2010 | |
| 32 | Neutron Star Collision (Love Is Forever) | 26 | Jun 2010 | |
| 33 | Undisclosed Desires | 3 | Jan 2011 | |
| 34 | Survival | Jul 2012 | |
| 35 | Supremacy | Mar 2013 | |
| 36 | Animals | Mar 2013 | |
| 37 | Panic Station | 1 | Apr 2013 | |
| 38 | Madness | 1 | 19 | Apr 2013 | |
| 39 | Follow Me | Sep 2013 | |
| 40 | Dead Inside | 1 | Mar 2015 | |
| 41 | Defector | Jun 2015 | |
| 42 | The Handler | Jun 2015 | |
| 43 | Mercy | Jun 2015 | |
| 44 | Psycho | Jun 2015 | |
| 45 | Reapers | Jun 2015 | |
| 46 | Dig Down | Jul 2017 | |